Merkle tree
Merkle tree or hash tree is a tree in which every leaf node is labelled with a data block and every non-leaf node is labelled with the cryptographic hash of the labels of its child nodes. Hash trees allow efficient and secure verification of the contents of large data structures. Hash trees are a generalization of hash lists and hash chains.
Demonstrating that a leaf node is a part of a given binary hash tree requires computing a number of hashes proportional to the logarithm of the number of leaf nodes of the tree; this contrasts with hash lists, where the number is proportional to the number of leaf nodes itself.
The concept of hash trees is named after Ralph Merkle who patented it in 1979.
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Bitcoin merkle tree
Hash trees can be used to verify any kind of data stored, handled and transferred in and between computers. Currently the main use of hash trees is to make sure that data blocks received from other peers in a peer-to-peer network are received undamaged and unaltered, and even to check that the other peers do not lie and send fake blocks. Suggestions have been made to use hash trees in trusted computing systems. Hash trees are also used in hash-based cryptography.
Hash trees are used in the IPFS, Btrfs and ZFS file systems (to counter data degradation), BitTorrent protocol, Dat protocol, Apache Wave protocol, Git and Mercurial distributed revision control systems, the Tahoe-LAFS backup system, the Bitcoin and Ethereum peer-to-peer networks, the Certificate Transparency framework, and a number of NoSQL systems like Apache Cassandra, Riak and Dynamo.
The initial Bitcoin implementation of Merkle trees by Satoshi Nakamoto applies the compression step of the hash function to an excessive degree, which is mitigated by using Fast Merkle Trees.
Merkle hash tree review
A hash tree is a tree of hashes in which the leaves are hashes of data blocks in, for instance, a file or set of files. Nodes further up in the tree are the hashes of their respective children. For example, in the picture hash 0 is the result of hashing the concatenation of hash 0-0 and hash 0-1. That is, hash 0 = hash( hash 0-0 + hash 0-1 ) where + denotes concatenation.
Most hash tree implementations are binary (two child nodes under each node) but they can just as well use many more child nodes under each node.
Usually, a cryptographic hash function such as SHA-2 is used for the hashing. If the hash tree only needs to protect against unintentional damage, much less secure checksums such as CRCs can be used.
In the top of a hash tree there is a top hash (or root hash or master hash). Before downloading a file on a p2p network, in most cases the top hash is acquired from a trusted source, for instance a friend or a web site that is known to have good recommendations of files to download. When the top hash is available, the hash tree can be received from any non-trusted source, like any peer in the p2p network. Then, the received hash tree is checked against the trusted top hash, and if the hash tree is damaged or fake, another hash tree from another source will be tried until the program finds one that matches the top hash.
The main difference from a hash list is that one branch of the hash tree can be downloaded at a time and the integrity of each branch can be checked immediately, even though the whole tree is not available yet. For example, in the picture, the integrity of data block 2 can be verified immediately if the tree already contains hash 0-0 and hash 1 by hashing the data block and iteratively combining the result with hash 0-0 and then hash 1 and finally comparing the result with the top hash. Similarly, the integrity of data block 3 can be verified if the tree already has hash 1-1 and hash 0. This can be an advantage since it is efficient to split files up in very small data blocks so that only small blocks have to be re-downloaded if they get damaged. If the hashed file is very big, such a hash tree or hash list becomes fairly big. But if it is a tree, one small branch can be downloaded quickly, the integrity of the branch can be checked, and then the downloading of data blocks can start.
Second preimage attack
The Merkle hash root does not indicate the tree depth, enabling a second-preimage attack in which an attacker creates a document other than the original that has the same Merkle hash root. For the example above, an attacker can create a new document containing two data blocks, where the first is hash 0-0 + hash 0-1, and the second is hash 1-0 + hash 1-1.
One simple fix is defined in Certificate Transparency: when computing leaf node hashes, a 0x00 byte is prepended to the hash data, while 0x01 is prepended when computing internal node hashes. Limiting the hash tree size is a prerequisite of some formal security proofs, and helps in making some proofs tighter. Some implementations limit the tree depth using hash tree depth prefixes before hashes, so any extracted hash chain is defined to be valid only if the prefix decreases at each step and is still positive when the leaf is reached.
Tiger tree hash
The Tiger tree hash is a widely used form of hash tree. It uses a binary hash tree (two child nodes under each node), usually has a data block size of 1024 bytes and uses the Tiger hash.
Tiger tree hashes are used in Gnutella, Gnutella2, and Direct Connect P2P file sharing protocols and in file sharing applications such as Phex, BearShare, LimeWire, Shareaza, DC++ and Valknut.
Hash tree Example
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